# -*- lexical-binding: t; -*-
#+title: Nathan's Doom Emacs Configuration
#+author: Nathan McCarty
#+PROPERTY: header-args:emacs-lisp :tangle yes

My doom emacs configuration

* Basic Doom stuff
The provided default ~config.el~

#+begin_src emacs-lisp
;;; $DOOMDIR/config.el -*- lexical-binding: t; -*-

;; Place your private configuration here! Remember, you do not need to run 'doom
;; sync' after modifying this file!


;; Some functionality uses this to identify you, e.g. GPG configuration, email
;; clients, file templates and snippets. It is optional.
(setq user-full-name "Nathan McCarty"
      user-mail-address "nathan@mccarty.io")

;; Doom exposes five (optional) variables for controlling fonts in Doom:
;;
;; - `doom-font' -- the primary font to use
;; - `doom-variable-pitch-font' -- a non-monospace font (where applicable)
;; - `doom-big-font' -- used for `doom-big-font-mode'; use this for
;;   presentations or streaming.
;; - `doom-unicode-font' -- for unicode glyphs
;; - `doom-serif-font' -- for the `fixed-pitch-serif' face
;;
;; See 'C-h v doom-font' for documentation and more examples of what they
;; accept. For example:

;; Figure out what the name and size of the font are going to be based on the system type and
;; hostname
(let ((nm/font-name (cond ((or IS-MAC IS-WINDOWS) "Iosevka Nerd Font")
                          (t "Iosevka Nerd Font")))
      (nm/font-size (cond (IS-MAC 11)
                          ((or IS-WINDOWS (string= (system-name) "wsl")) 16)
                          (t 13)))
      (nm/variable-font-size (cond (IS-MAC 13)
                                   ((or IS-WINDOWS (string= (system-name) "wsl")) 19)
                                   (t 15))))
  (setq doom-font (font-spec :family nm/font-name :size nm/font-size :weight 'semi-light)
          doom-unicode-font (font-spec :family nm/font-name :size nm/font-size :weight 'semi-light)
          doom-variable-pitch-font (font-spec :family "Iosevka Sans Quasi" :size nm/variable-font-size)))

;;
;; If you or Emacs can't find your font, use 'M-x describe-font' to look them
;; up, `M-x eval-region' to execute elisp code, and 'M-x doom/reload-font' to
;; refresh your font settings. If Emacs still can't find your font, it likely
;; wasn't installed correctly. Font issues are rarely Doom issues!

;; There are two ways to load a theme. Both assume the theme is installed and
;; available. You can either set `doom-theme' or manually load a theme with the
;; `load-theme' function. This is the default:
;; (setq doom-theme 'doom-solarized-dark)
(use-package! solarized-theme
  :demand t
  :config
  (setq solarized-distinct-fringe-background t
        solarized-distinct-doc-face t
        solarized-scale-markdown-headlines t
        solarized-scale-org-headlines t)
  (advice-add #'enable-theme :after
              (lambda (&rest _)
                (set-face-attribute 'mode-line nil :overline nil :underline nil)
                (set-face-attribute 'mode-line-inactive nil :overline nil :underline nil)))
  (load-theme 'solarized-selenized-black t))

;; This determines the style of line numbers in effect. If set to `nil', line
;; numbers are disabled. For relative line numbers, set this to `relative'.
(setq display-line-numbers-type t)

;; If you use `org' and don't want your org files in the default location below,
;; change `org-directory'. It must be set before org loads!
(setq org-directory "~/Org/")


;; Whenever you reconfigure a package, make sure to wrap your config in an
;; `after!' block, otherwise Doom's defaults may override your settings. E.g.
;;
;;   (after! PACKAGE
;;     (setq x y))
;;
;; The exceptions to this rule:
;;
;;   - Setting file/directory variables (like `org-directory')
;;   - Setting variables which explicitly tell you to set them before their
;;     package is loaded (see 'C-h v VARIABLE' to look up their documentation).
;;   - Setting doom variables (which start with 'doom-' or '+').
;;
;; Here are some additional functions/macros that will help you configure Doom.
;;
;; - `load!' for loading external *.el files relative to this one
;; - `use-package!' for configuring packages
;; - `after!' for running code after a package has loaded
;; - `add-load-path!' for adding directories to the `load-path', relative to
;;   this file. Emacs searches the `load-path' when you load packages with
;;   `require' or `use-package'.
;; - `map!' for binding new keys
;;
;; To get information about any of these functions/macros, move the cursor over
;; the highlighted symbol at press 'K' (non-evil users must press 'C-c c k').
;; This will open documentation for it, including demos of how they are used.
;; Alternatively, use `C-h o' to look up a symbol (functions, variables, faces,
;; etc).
;;
;; You can also try 'gd' (or 'C-c c d') to jump to their definition and see how
;; they are implemented.
#+end_src
** Garbage collector configuration
#+begin_src emacs-lisp
(after! gcmh
  (setq gcmh-high-cons-threshold (* 64 1024 1024)))
#+end_src
** Setup my user prefix
Use ~SPC z~ as my user prefix for custom commands and what not
#+begin_src emacs-lisp
(map! :leader
      (:prefix ("z" . "custom")))
#+end_src

Add =~/.authinfo= to ~auth-sources~:
#+begin_src emacs-lisp
(add-to-list 'auth-sources "~/.authinfo")
#+end_src
* Appearance, UX, and Fixes
** Mixed Pitch Mode
Use mixed pitch mode in prose writing modes, to make the writing experience a bit more pleasant.
This tweak applies to:
- ~org-mode~
- ~markdown-mode~
#+begin_src emacs-lisp
(use-package! mixed-pitch
  :hook
  (org-mode . mixed-pitch-mode)
  (markdown-mode . mixed-pitch-mode)
  :config
  (setq mixed-pitch-set-height t))
#+end_src

Setting ~mixed-pitch-set-height~ is required to get ~mixed-pitch-mode~ to render fonts with the correct size in doom emacs, apparently.
** Modeline configuration
Setup our faces, our theme doesn't play nice with doom-modeline, so we've got to change the insert state to make it's color actually unique, I'm going to use blue:
#+begin_src emacs-lisp
(after! doom-modeline
  (custom-set-faces
   '(doom-modeline-evil-insert-state
     ((t
       (:inherit
        (font-lock-string-face bold)))))))
#+end_src

Configure Icons
#+begin_src emacs-lisp
(after! doom-modeline
  (setq doom-modeline-icon t
        doom-modeline-major-mode-icon t
        doom-modeline-buffer-state-icon t))
#+end_src

Turn on the hud, see where we are at a glance:
#+begin_src emacs-lisp
(after! doom-modeline
  (setq doom-modeline-hud t))
#+end_src

Configure file name display
#+begin_src emacs-lisp
(after! doom-modeline
  (setq doom-modeline-buffer-filename-style 'truncate-with-project))
#+end_src

Display the time in the modeline
#+begin_src emacs-lisp
(after! doom-modeline
  (setq doom-modeline-time t))
#+end_src
** Treemacs
Configure treemacs, doing the following:
+ Set the width of the buffer to 28 characters
+ Bind the select window function to ~M-0~
#+begin_src emacs-lisp
(after! treemacs
  (setq treemacs-width 28)
  ;; (bind-key "M-0" #'treemacs-select-window)
  )
#+end_src
** Alert
Configure notifications that originate from within emacs
#+begin_src emacs-lisp
(use-package! alert
  :config
  ;; TODO: Make this conditional so we can make the correct choice on macos
  (setq alert-default-style 'libnotify))
#+end_src
** Dired
Modify the ~dired-omit-files~ regex to exclude the current working directory (~.~), but not the parent directory(~..~).
#+begin_src emacs-lisp
(after! dired
  (setq dired-omit-files "\\`[.]?#\\|\\`[.]?\\'\\|^\\.DS_Store\\'\\|^\\.project\\(?:ile\\)?\\'\\|^\\.\\(?:svn\\|git\\)\\'\\|^\\.ccls-cache\\'\\|\\(?:\\.js\\)?\\.meta\\'\\|\\.\\(?:elc\\|o\\|pyo\\|swp\\|class\\)\\'"))
#+end_src
** Setup keychain environment
Load the keychain environment variables into emacs
#+begin_src emacs-lisp
(require 'keychain-environment)
(keychain-refresh-environment)
#+end_src
** Configure indent guides
First disable the automatic colors mode, and turn on responsive mode
#+begin_src emacs-lisp
(after! highlight-indent-guides
  (setq highlight-indent-guides-auto-enabled nil
        highlight-indent-guides-responsive 'stack))
#+end_src

Now setup our theming
#+begin_src emacs-lisp
(custom-theme-set-faces! 'solarized-selenized-black
  '(highlight-indent-guides-character-face :foreground "#3b3b3b")
  '(highlight-indent-guides-top-character-face :foreground "#70b433")
  '(highlight-indent-guides-stack-character-face :foreground "#a580e2"))
#+end_src
** Uniquify
First, we need to work around an issue with perspective, using some code taken from [[https://github.com/Bad-ptr/persp-mode.el/issues/104#issuecomment-1038784878][persp-mode.el #104]]:
#+begin_src emacs-lisp
(with-eval-after-load "persp-mode"
  (defun persp--wc-to-writable (wc)
    (cl-labels
        ((wc-to-writable
          (it)
          (cond
           ((and it (listp it))
            (cl-destructuring-bind (head . tail) it
              (cond
               ;; ((listp head)
               ;;  (cons (wc-to-writable head)
               ;;        (wc-to-writable tail)))
               ((eq 'parameters head)
                (let ((rw-params
                       (delq nil
                             (mapcar
                              #'(lambda (pc)
                                  (when
                                      (and
                                       (alist-get (car pc) window-persistent-parameters)
                                       (persp-elisp-object-readable-p (cdr pc)))
                                    pc))
                              tail))))
                  (if rw-params
                      `(parameters
                        ,@rw-params)
                    :delete)))
               (t
                (let ((new-head (wc-to-writable head))
                      (new-tail (wc-to-writable tail)))
                  (when (eq :delete new-tail)
                    (setq new-tail nil))
                  (if (eq :delete new-head)
                      new-tail
                    (cons new-head
                          new-tail)))))))
           ((bufferp it)
            (if (buffer-live-p it)
                (buffer-name it)
              "*Messages*"))
           ((markerp it)
            (marker-position it))
           (t it))))
      (wc-to-writable wc)))

  (setq persp-window-state-get-function
        #'(lambda (&optional frame rwin)
            (when (or rwin (setq rwin (frame-root-window
                                       (or frame (selected-frame)))))
              (window-state-get rwin nil))))

  (add-hook 'persp-before-save-state-to-file-functions
            #'(lambda (_fname phash _rpfp)
                (mapc
                 #'(lambda (persp)
                     (if persp
                         (setf (persp-window-conf persp)
                               (persp--wc-to-writable (persp-window-conf persp)))
                       (setq persp-nil-wconf
                             (persp--wc-to-writable persp-nil-wconf))))
                 (persp-persps phash)))))
#+end_src
Then we can override persp's override of uniquify:
#+begin_src emacs-lisp
;; doom's `persp-mode' activation disables uniquify, b/c it says it breaks it.
;; It doesn't cause big enough problems for me to worry about it, so we override
;; the override. `persp-mode' is activated in the `doom-init-ui-hook', so we add
;; another hook at the end of the list of hooks to set our uniquify values.
(add-hook! 'doom-init-ui-hook
           :append ;; ensure it gets added to the end.
           #'(lambda () (require 'uniquify) (setq uniquify-buffer-name-style 'forward)))
#+end_src
Include part of the path to uniquify buffer names
#+begin_src emacs-lisp
(setq uniquify-buffer-name-style 'forward)
#+end_src
** Transparency
Make the background transparent on linux
#+begin_src emacs-lisp
(when (and IS-LINUX (version<= "29.0.0" emacs-version))
  (set-frame-parameter nil 'alpha-background 95)
  (add-to-list 'default-frame-alist '(alpha-background . 95)))
#+end_src
* Basic Editing
** Evil Mode
Emacs is best vim, fite me

Tune evil mode to be how we like it
#+begin_src emacs-lisp
(use-package! evil
  :config
  (setq
   ;; Use emacs style undo behavior instead of vim style
   evil-want-fine-undo t
   ;; Make o/O not continue comments
   +evil-want-o/O-to-continue-comments nil)
  ;; Set the local leader key for normal mode, we'll use tab
  (evil-set-leader '(normal) (kbd "<backspace>") t))
#+end_src
** Fill Column
Set the default fill column to 100
#+begin_src emacs-lisp
(setq-default fill-column 100)
#+end_src
** Navigation
*** Avy
More modern ace-jump-mode

Set up our key bindings
#+begin_src emacs-lisp
(map! :leader
      (:prefix ("j" . "jump")
               "c" #'avy-goto-char
               "x" #'avy-goto-char-2
               "f" #'avy-goto-line
               "w" #'avy-goto-word-1
               "e" #'avy-goto-word-0))
#+end_src

Configure avy to use relative-to-point paths for every command we have bound
#+begin_src emacs-lisp
(after! avy
  (setq avy-orders-alist
        '((avy-goto-char . avy-order-closest)
          (avy-goto-word-0 . avy-order-closest)
          (avy-goto-word-1 . avy-order-closest)
          (avy-goto-char-2 . avy-order-closest)
          (avy-goto-line . avy-order-closest))))
#+end_src
*** Swiper
Better isearch

Override old isearch
#+begin_src emacs-lisp
(after! swiper
  (define-key! "C-s" 'swiper))
#+end_src
** Crux
Smarter replacements for emacs built ins, with the following in use:
 - ~crux-smart-kill-line~ - Smart ~C-k~ replacement
 - ~crux-top-join-line~ - ~C-c ^~ Join two lines

#+begin_src emacs-lisp
(use-package! crux
   ;; :bind (("C-k"   . crux-smart-kill-line))
  )
#+end_src
** string-inflection
Automatically cycle case of names
#+begin_src emacs-lisp
(global-unset-key (kbd "C-q"))
(use-package! string-inflection
  ;; :bind (("C-q" . string-inflection-all-cycle))
  )
(cheatsheet-add-group 'string-inflection
                      '(:key "C-q" :description "Rotate case"))
#+end_src
** Smart Hungry Delete
Gobble up whitespace in a smarter way
#+begin_src emacs-lisp
(use-package! smart-hungry-delete
  ;; :bind (("M-<backspace>" . smart-hungry-delete-backward-char))
  )
#+end_src
** Search
*** Consult
We need to configure the evil collection binds for consult
#+begin_src emacs-lisp
(with-eval-after-load 'consult (evil-collection-consult-setup))
#+end_src

And bind up the search
#+begin_src emacs-lisp
(after! evil
  (map! :n "C-s" #'consult-line
        :n "SPC s :" #'consult-line-multi))
#+end_src
*** Deadgrep
Ripgrep, but from within emacs
#+begin_src emacs-lisp
(use-package! deadgrep
  ;; :bind ("C-c s r" . deadgrep)
  )
#+end_src
** Spell Checking
Add in all of our dictionaries
#+begin_src emacs-lisp
(after! spell-fu
  (add-hook 'spell-fu-mode-hook
            (lambda ()
              (spell-fu-dictionary-add (spell-fu-get-ispell-dictionary "en"))
              (spell-fu-dictionary-add (spell-fu-get-ispell-dictionary "en-science"))
              (spell-fu-dictionary-add (spell-fu-get-ispell-dictionary "en-computers"))))
  ;; (bind-key "C-." #'+spell/correct)
  )
#+end_src
** Auto completion
Plug in hotfuzz
#+begin_src emacs-lisp
(after! vertico
  (require 'hotfuzz)
  (setq completion-styles '(hotfuzz)))
#+end_src

Configure the fuzzy match
#+begin_src emacs-lisp
(setq completion-ignore-case t
      read-file-name-completion-ignore-case t)
#+end_src
* Org Mode
Improvements to the best mode in emacs

Setup some basic cosmetic improvements
 - Disable showing of emphasis markers
 - Show entities as utf-8 ~test~

  #+begin_src emacs-lisp
(setq org-hide-emphasis-markers t
      org-pretty-entities t)
  #+end_src

Setup org-superstar-mode, to make lists and bullets pretty

  #+begin_src emacs-lisp
(use-package! org-superstar
  :hook (org-mode . org-superstar-mode)
  :config
  (setq org-superstart-special-todo-items t))
  #+end_src

  Automatically add all files in the org dir to the agenda. This performs some filtering of the files returned from ~directory-files~ to exclude some things that would confuse org-agenda.
  We also setup an idle timer, with a short duration, only 30 seconds, to update the ~org-agenda-files~ list, as well as a longer regular timer with a duration of 300 seconds (5 minutes) to keep the agenda up to date even when we are actively using emacs.
  #+begin_src emacs-lisp
(defvar nm/org-agenda-files-timer nil
  "Timer for automatically updating the org-agenda files")
(defvar nm/time-at-agenda-update 0
  "Time at last agenda update")

(defun nm/update-org-agenda-files ()
  "Helper function for updating the org-agenda files."
  ;; Calcuate time since last update
  (let* ((time-seconds  (float-time (current-time)))
         (seconds-since (- time-seconds nm/time-at-agenda-update))
         (idle-time     (current-idle-time))
         (idle-seconds  (if idle-time (float-time idle-time) 0)))
    ;; If it has been more than 10 minutes since our last agenda file update, then go ahead and update
    ;; Additionally update if the idle timer is greater than 30 seconds
    (when (or
           (> seconds-since 600)
           (> idle-seconds 30))
      ;; Update our time variable
      (setq nm/time-at-agenda-update seconds-since)
      ;; Update our agenda files
      (setq org-agenda-files
        (seq-filter (lambda (item)
                      (and
                       ;; Exclude the syncthing folder
                       (not (string-match-p ".*stfolder$" item))
                       ;; Exclude gpg encrypted org files
                       (not (string-match-p ".*\\.gpg" item))
                       ;; Exclude the elfeed data folder
                       (not (string-match-p (concat "^" (regexp-quote org-directory) "elfeed/.*") item))
                       ;; Only accept org files
                       (string-match-p ".*org$" item)
                       ;; Make sure the file actually has in-progress todo markers in it
                       (let ((regex "^\\*+\\s*(TODO|PROJ|LOOP|STRT|WAIT|HOLD|IDEA|\\[ \\]|\\[-\\]|\\[?\\])")
                             (item (expand-file-name item)))
                         ;; Use ripgrep to test for active todos in the file
                         (eq 0 (call-process "rg" nil nil nil "-q" regex item)))))
                    (directory-files-recursively org-directory directory-files-no-dot-files-regexp))))
  ;; Update the timer, first canceling the old one
  (when nm/org-agenda-files-timer
    (cancel-timer nm/org-agenda-files-timer))
  (setq nm/org-agenda-files-timer (run-with-timer 60 nil 'nm/update-org-agenda-files))))

(after! org
  ;; Set the agenda files on first start
  ;; This also configures the timer for us
  (nm/update-org-agenda-files))
  #+end_src

Set up two different timers for updating the org-agenda buffer.
+ Idle timer
  The idle timer simply updates the views unconditionally, and is set with a slightly higher timeout than our idle time that updates the org agenda files. This idle time can safely modify the state of the buffer without any other checks, as if the user is idle, they aren't doing anything in the buffer
  + Timer timer
    Setup a timer that attempts to update the org-agenda buffer every 5 minutes. This timer is a little bit unsafe, so it _could_ end up annoying the user by updating the state while they are in the middle of doing something, so it cancels out and does nothing  if the user is currently focused on the agenda buffer.
  #+begin_src emacs-lisp
(defvar nm/org-agenda-update-timer nil
  "Timer for automatically updating the org-agenda views")

(defun nm/org-agenda-refresh-conditional ()
  "Helper function to only refresh the org-agenda views if it
either isn't focused or we have been idle long enough. This
avoids updating the buffer, and thus annoying the user, while
they are in the middle of doing something.

This function will run on a 60 second loop, only actually doing
work if it thinks it needs to."
  ;; Make sure the org-agenda-buffer exists, bail out if it doesnt
  (when (boundp 'org-agenda-buffer-name)
    ;; Attempt to get the org agenda buffer
    (when-let ((buffer (get-buffer org-agenda-buffer-name)))
      ;; Calcuate idle time
      (let* ((idle-time (current-idle-time))
             (idle-seconds (if idle-time (float-time idle-time) 0)))
        ;; Update the org-agenda views if any of the following apply:
        ;; - The agenda buffer is not in focus
        ;; - The idle time is greater than one minute
        (when (or
               (not (eq (window-buffer (selected-window)) buffer))
               (> idle-seconds 60))
          ;; Since we are not in the org-agenda-buffer it is safe to rebuild the views
          (with-current-buffer buffer
            (org-agenda-redo-all))))))
    ;; Update the timer, first canceling the old one
    (when nm/org-agenda-update-timer
      (cancel-timer nm/org-agenda-update-timer))
    (setq nm/org-agenda-update-timer (run-with-timer 60 nil 'nm/org-agenda-refresh-conditional)))

(after! org
  ;; This method sets up the timer on its own
  (nm/org-agenda-refresh-conditional))
#+end_src
** Log state changes and setup TODO keywords
Configure the logging, we want to log into a drawer and also log refiles, reschedules, and repeats
  #+begin_src emacs-lisp
(after! org
  (setq org-log-into-drawer t
        org-log-refile 'time
        org-log-repeat 'time
        org-log-reschedule 'time
        org-log-done 'time))
  #+end_src
  We'll need to override the doom provided ~org-todo-keywords~ to get the state transitions we want logged
  #+begin_src emacs-lisp
(after! org
  (setq org-todo-keywords
        '((sequence
           "TODO(t)"  ; A task that needs doing & is ready to do
           "PROJ(p)"  ; A project, which usually contains other tasks
           "LOOP(r)"  ; A recurring task
           "STRT(s!)"  ; A task that is in progress
           "WAIT(w!)"  ; Something external is holding up this task
           "HOLD(h!)"  ; This task is paused/on hold because of me
           "IDEA(i)"  ; An unconfirmed and unapproved task or notion
           "|"
           "DONE(d!)"  ; Task successfully completed
           "KILL(k!)") ; Task was cancelled, aborted or is no longer applicable
          (sequence
           "[ ](T)"   ; A task that needs doing
           "[-](S!)"   ; Task is in progress
           "[?](W!)"   ; Task is being held up or paused
           "|"
           "[X](D!)")  ; Task was completed
          (sequence
           "|"
           "OKAY(o!)"
           "YES(y!)"
           "NO(n!)"))
        org-todo-keyword-faces
        '(("[-]"  . +org-todo-active)
          ("STRT" . +org-todo-active)
          ("[?]"  . +org-todo-onhold)
          ("WAIT" . +org-todo-onhold)
          ("HOLD" . +org-todo-onhold)
          ("PROJ" . +org-todo-project)
          ("NO"   . +org-todo-cancel)
          ("KILL" . +org-todo-cancel))))
  #+end_src
** org-roam
A second brain in emacs


Here we:
 - Set the roam directory to be a sub-directory of the org directory, which I have in syncthing
 - Use a more informative display template, as we use ivy
 - Turn on db autosync
 - Setup dalies to add the time of the capture to the note
#+begin_src emacs-lisp
(use-package! org-roam
  :custom
  (org-roam-directory (concat org-directory "roam/"))
  (org-roam-complete-everywhere t)
  ;; :bind (("C-c r l" . org-roam-buffer-toggle)
  ;;        ("C-c r f" . org-roam-node-find)
  ;;        ("C-c r g" . org-roam-graph)
  ;;        ("C-c r i" . org-roam-node-insert)
  ;;        ("C-c r c" . org-roam-capture)
  ;;        ("C-c r T" . org-roam-dailies-capture-today)
  ;;        ("C-c r t" . org-roam-dailies-goto-today)
  ;;        :map org-mode-map
  ;;        ("C-M-i" . completion-at-point))
  :config
  (setq org-roam-node-display-template (concat "${title:*} " (propertize "${tags:10}" 'face 'org-tag)))
  (org-roam-db-autosync-mode)
  (setq org-roam-dailies-capture-templates
      '(("d" "default" entry "* %<%I:%M %p>: %?"
         :if-new (file+head "%<%Y-%m-%d>.org" "#+title: %<%Y-%m-%d>\n")))))
#+end_src

And we want the nice fancy [[https://github.com/org-roam/org-roam-ui][ui]], so go ahead and set that up
#+begin_src emacs-lisp
(use-package! websocket
  :after org-roam)

(use-package! org-roam-ui
  :after org-roam
  :config
  (setq org-roam-ui-sync-theme t
          org-roam-ui-follow t
          org-roam-ui-update-on-save t
          org-roam-ui-open-on-start t))
#+end_src
** org-protocol-capture-html
[[https://github.com/alphapapa/org-protocol-capture-html][Capture webpages]] really nice like
#+begin_src emacs-lisp
(use-package! org-protocol-capture-html)
#+end_src
** Capture Templates
The default template for org-protocol-capture-html
#+begin_src emacs-lisp
(after! org
  (push
   '("w" "Web site" entry
     (file "")
     "* %a :website:\n\n%U %?\n\n%:initial")
   org-capture-templates))
#+end_src
** anki-editor
Flash cards from within emacs.
#+begin_src emacs-lisp
(use-package! anki-editor)
#+end_src
** org-agenda customization
Empty out the list and define our prefixes first
#+begin_src emacs-lisp
(after! org
  (setq org-agenda-custom-commands
        '(("p" . "Project Views")
          ("d" . "TODO lists"))))
#+end_src
*** Random project selection
First some library code
#+begin_src emacs-lisp
(defun org-compare--get-marker (entry)
  "Return the marker for ENTRY.

This marker points to the location of the headline referenced by
ENTRY."
  (get-text-property 1 'org-marker entry))

(defvar org-compare-random-refresh nil
  "Whether `org-compare-randomly' should refresh its keys.

See the docs for `org-compare-randomly' for more information.")

(defun org-compare-randomly--update-sort-key (entry table generator)
  "Return sort key for ENTRY in TABLE, generating it if necessary.
For internal use by `org-compare-randomly-by'."
  (let* ((marker    (org-compare--get-marker entry))
         (hash-key  `(,(marker-buffer marker) . ,(marker-position marker))))
    (or (gethash hash-key table)
        (puthash hash-key (funcall generator entry) table))))

(defun org-compare-randomly-by (generator)
  "Return a random comparator using GENERATOR.

The comparator returned is like `org-compare-randomly', except
the distribution of random keys is controlled by GENERATOR and
may thus be non-uniform.

The function GENERATOR is called with a single argument, an
agenda entry, when that entry lacks a sort key.  It should return
a number, which is then used for all comparisons until the key
list is cleared; see `org-compare-randomly' for more details on
this.

Subsequent calls to `org-compare-randomly-by' produce comparators
with independent sets of sort keys."
  (let ((table (make-hash-table :test #'equal)))
    (lambda (x y)
      (when org-compare-random-refresh
        (clrhash table)
        (setq org-compare-random-refresh nil))
      (let ((x-val (org-compare-randomly--update-sort-key x table generator))
            (y-val (org-compare-randomly--update-sort-key y table generator)))
        (cond
         ((= x-val y-val)  nil)
         ((< x-val y-val)   -1)
         ((> x-val y-val)   +1))))))

(defun org-compare-randomly ()
  "Return a comparator implementing a random shuffle.

When given distinct agenda entries X and Y, the resulting
comparator has an equal chance of returning +1 and -1 (and a
miniscule chance of returning nil).  Subsequent calls will produce
results consistent with a total ordering.

To accomplish this, a hash table of randomly-generated sort keys
is maintained.  This table will persist until the comparator is
called when the variable `org-compare-random-refresh' is non-nil.
This means that setting this variable as part of a custom agenda
command using this comparator as `org-agenda-cmp-user-defined'
will cause the sort order to change whenever the agenda is
refreshed; otherwise, it will persist until Emacs is restarted.

Note that if you don't want the sort order to change on refresh,
you need to be careful that the comparator is created when the
custom agenda command is defined, not when it's called, e.g.

    (add-to-list
     'org-agenda-custom-commands
     `(\"y\" \"Example Agenda\"
       ((todo
         \"\"
         ((org-agenda-cmp-user-defined ',(org-compare-randomly))
          (org-agenda-sorting-strategy '(user-defined-up)))))))

\(Notice the use of backquote.)

Comparators resulting from different calls to this function have
independent key tables."
  (org-compare-randomly-by (lambda (_) (random))))
#+end_src

Then add our custom command, one section for "TODO"s and another for top level "PROJ"s
#+begin_src emacs-lisp
(after! org
  (add-to-list 'org-agenda-custom-commands
               '("pr" "Random Project TODOs"
                 ((tags "proj/TODO"
                        ((org-agenda-max-entries 5)
                         (org-agenda-cmp-user-defined (org-compare-randomly))
                         (org-compare-random-refresh t)
                         (org-agenda-sorting-strategy '(user-defined-up))))
                  (tags "proj/STRT"
                        ((org-agenda-max-entries 5)
                         (org-agenda-cmp-user-defined (org-compare-randomly))
                         (org-compare-random-refresh t)
                         (org-agenda-sorting-strategy '(user-defined-up))))
                  (tags "proj/PROJ"
                        ((org-agenda-max-entries 5)
                         (org-agenda-cmp-user-defined (org-compare-randomly))
                         (org-compare-random-refresh t)
                         (org-agenda-sorting-strategy '(user-defined-up))))
                  (todo "IDEA"
                        ((org-agenda-max-entries 5)
                         (org-agenda-cmp-user-defined (org-compare-randomly))
                         (org-compare-random-refresh t)
                         (org-agenda-sorting-strategy '(user-defined-up))))))))
#+end_src
*** Task fillters
Create a view with the following tags excluded:
+ =:calander:=
+ =:work:=
+ =:proj:=

This serves as a good default "I want to do something" board
#+begin_src emacs-lisp
(after! org
  (add-to-list 'org-agenda-custom-commands
               '("da" "Main TODO list"
                 tags-todo "-calander-proj-work")))
#+end_src

Create a view containing only work tasks
#+begin_src emacs-lisp
(after! org
  (add-to-list 'org-agenda-custom-commands
               '("ds" "Work TODO list"
                 tags-todo "+work")))
#+end_src

Create a view containing only project tasks
#+begin_src emacs-lisp
(after! org
  (add-to-list 'org-agenda-custom-commands
               '("dd" "Project TODO list"
                 tags-todo "+proj")))
#+end_src
** Set tags alist
#+begin_src emacs-lisp
(after! org
  (setq org-tag-alist '(("proj" . ?p)
                        ("complaint" . ?c)
                        ("work" . ?w)
                        ("calander" . ?d))))
#+end_src
** Modules configuration
*** org habits
Enable the module
#+begin_src emacs-lisp
(after! org
  (add-to-list 'org-modules 'org-habit))
#+end_src
Extend the day until around 3AM, for those days with late bed time
#+begin_src emacs-lisp
(after! org
  (setq org-extend-today-until 4
        org-use-effective-time t))
#+end_src
*** org collector
Provides nice tables from the properties of an item
#+begin_src emacs-lisp
(after! org
  (add-to-list 'org-modules 'org-collector))
#+end_src
** Babel config
*** Ansi colors
First, bring in ~ansi-color~
#+begin_src emacs-lisp
(require 'ansi-color)
#+end_src
Then, hook into babel and apply those colors
#+begin_src emacs-lisp
(after! org
  (defun nm/babel-ansi ()
    (when-let ((beg (org-babel-where-is-src-block-result nil nil)))
      (save-excursion
        (goto-char beg)
        (when (looking-at org-babel-result-regexp)
          (let ((end (org-babel-result-end))
                (ansi-color-context-region nil))
            (ansi-color-apply-on-region beg end))))))
  (add-hook 'org-babel-after-execute-hook 'nm/babel-ansi))
#+end_src
** Org Chef
#+begin_src emacs-lisp
(use-package! org-chef
  :config
  (add-to-list 'org-capture-templates
               '("c" "Cookbook" entry (file "~/Org/cookbook.org")
                 "%(org-chef-get-recipe-from-url)"
                 :empty-lines 1))
  (add-to-list 'org-capture-templates
               '("m" "Manual Cookbook" entry (file "~/Org/cookbook.org")
                 "* %^{Recipe title: }\n  :PROPERTIES:\n  :source-url:\n  :servings:\n  :prep-time:\n  :cook-time:\n  :ready-in:\n  :END:\n** Ingredients\n   %?\n** Directions\n\n")))
#+end_src
* General Modes
** Magit
Further configuration for magit
*** magit-todos
Count the number of todos in the project in the ~magit-status~ buffer
#+begin_src emacs-lisp
(use-package! magit-todos
  :hook (magit-mode . magit-todos-mode))
#+end_src
*** magit-delta
Use delta for git diff display
#+begin_src emacs-lisp
(use-package! magit-delta
  :hook (magit-mode . magit-delta-mode))
#+end_src
*** magit-wip-mode
Stash autosaves inside of git
#+begin_src emacs-lisp
(magit-wip-mode)
#+end_src
** System integration
Various tools for interacting with the system from within emacs
*** Terminal
Doom already provides pretty nice vterm support, but lets take us a step further, using ~multi-vterm~ to provide ergonomic support for multiple terminals.

Vterm really doesn't like being installed through emacs on nix, so proper support for it in my setup requires installing it through nix like so:
#+begin_src nix :tangle no
let emacsPackage = (emacsPackagesFor emacs).emacsWithPackages (epgks: with epkgs; [
      vterm
    ]);
in
{
  environment.systemPackages = [
    emacsPackage
  ];
}
#+end_src
**** [[https://github.com/suonlight/multi-vterm][multi-vterm]]
Add ergonomic support for multiple vterm terminals
#+begin_src emacs-lisp
(when (not IS-WINDOWS)
 (use-package! multi-vterm))
#+end_src
* Programming
** General Editing
*** Sepraedit
Edit indirect for comments

Set the default mode to github flavored markdown, turn on smart use of fill column, and bind to the normal edit-indirect keybinding.
#+begin_src emacs-lisp
(use-package! separedit
  :config
  (setq separedit-default-mode 'gfm-mode
        separedit-continue-fill-column t))
#+end_src

Setup the binding
#+begin_src emacs-lisp
(map! :leader
      :desc "Separedit"
      "z s" #'separedit)
#+end_src
*** Rainbow delimiters
Makes pairs of delimiters into pretty colors. Hook this into prog-mode
#+begin_src emacs-lisp
(use-package! rainbow-delimiters
  :hook (prog-mode . rainbow-delimiters-mode))
#+end_src
*** YASnippet
Set the snippets directory to inside our org dir, since this gets synced
#+begin_src emacs-lisp :tangle yes
(after! yasnippet
  (add-to-list 'yas-snippet-dirs "~/Org/snippets")
  (yas-reload-all))
#+end_src
** LSP Mode
Custom configuration for lsp-mode
*** Exclude nix directories from file watchers
#+begin_src emacs-lisp
(after! lsp-mode
  (add-to-list 'lsp-file-watch-ignored-directories "[/\\\\]\\result\\")
  (add-to-list 'lsp-file-watch-ignored-directories "[/\\\\]\\result-doc\\"))
#+end_src
*** LSP UI
Turn on the UI features we want
**** Sideline
Show as much as possible in the sideline
#+begin_src emacs-lisp
(after! lsp-ui
  (setq lsp-ui-sideline-show-diagnostics t
      lsp-ui-sideline-show-hover t
      lsp-ui-sideline-show-code-actions t))
#+end_src
**** Peeking
Turn on peeking, and show us the directory as well
#+begin_src emacs-lisp
(after! lsp-ui
  (setq lsp-ui-peek-enable t
      lsp-ui-peek-show-directory t))
#+end_src
**** Documentation
Show the documentation in a popup frame in the top right corner
#+begin_src emacs-lisp
(after! lsp-ui
  (setq lsp-ui-doc-enable t
      lsp-ui-doc-position 'top
      lsp-ui-doc-show-with-cursor t))
#+end_src
*** Keybindings
Add some additional keybinds:
- ~SPC z l r~ to restart the lsp workspac
#+begin_src emacs-lisp
(after! lsp-mode
  (map! :leader
       (:prefix ("z l" . "lsp")
               "r" #'lsp-workspace-restart)))
#+end_src
e
** Rust
Configuration specific for rust
*** LSP Tweaks
Most of these are defaults, but I like having them explicit for my sanity

#+begin_src emacs-lisp
(after! lsp-mode
  (setq lsp-auto-configure t
        lsp-lens-enable t
        lsp-rust-analyzer-cargo-watch-command "clippy"
        lsp-rust-analyzer-cargo-watch-args ["--all-features"]
        lsp-rust-analyzer-experimental-proc-attr-macros t
        lsp-rust-analyzer-proc-macro-enable t
        lsp-rust-analyzer-use-rustc-wrapper-for-build-scripts t
        lsp-rust-analyzer-import-enforce-granularity t
        lsp-rust-analyzer-diagnostics-enable-experimental t
        lsp-rust-analyzer-display-chaining-hints t))
#+end_src
*** Configure cargo commands
Configure the ~cargo clippy~ and ~cargo check~ invoked through rustic mode to utilize the ~--all-targets~ and ~--all-features~ arguments by default.
#+begin_src emacs-lisp
(setq rustic-cargo-check-arguments "--all-targets --all-features"
      rustic-default-clippy-arguments "--all-targets --all-features")
#+end_src
** Nix
Use rnix-lsp
#+begin_src emacs-lisp
(after! lsp-mode
  (add-to-list 'lsp-language-id-configuration '(nix-mode . "nix"))
  (lsp-register-client
   (make-lsp-client :new-connection (lsp-stdio-connection '("rnix-lsp"))
                    :major-modes '(nix-mode)
                    :server-id 'nix)))
#+end_src
** Idris2
Configure idris2-mode, which we do manually since it's not yet in doom.
#+begin_src emacs-lisp
(use-package! idris2-mode
  :config
  (setq idris2-stay-in-current-window-on-compiler-error t))
#+end_src

Disable company in idris2-mode, it's broken for now
[[https://github.com/idris-community/idris2-mode/issues/36]]
#+begin_src emacs-lisp
(after! idris2-mode
  :config
  (setq company-global-modes '(not idris2-mode)))
#+end_src
** Haskell
Setup formatting
#+begin_src emacs-lisp
(after! lsp-haskell
  (setq lsp-haskell-formatting-provider "brittany"))
#+end_src
* Composition
Modes for handling plain text and prose
** Markdown
Everybody's favorite markup format
*** Markdown mode
Make the following configuration tweaks to result in a better markdown experience:
 - Use a variable pitch font (this is prose after all)
 - Turn on header scaling
 - Default to gfm mode for readmes
 - Turn on auto-fill mode
 - Hide mark up
 - Fontify code blocks with the language's native mode

The goal here is to create a more pretty and fluid composition environment for prose, closer to what you would get in a word processor, but without the horrors of wysiwyg.

#+begin_src emacs-lisp
(use-package! markdown-mode
  :mode ("README\\.md" . gfm-mode)
  :hook (markdown-mode . variable-pitch-mode)
        (markdown-mode . auto-fill-mode)
  :config
  (setq markdown-header-scaling t
        markdown-hide-markup t
        markdown-fontify-code-blocks-natively t))
#+end_src
*** Grip mode
Provide a live, rendered preview when editing markdown readmes using [[https://github.com/joeyespo/grip][grip]].
#+begin_src emacs-lisp
(use-package! grip-mode
  ;; :bind (:map markdown-mode-command-map
  ;;             ("g" . grip-mode))
  )
#+end_src
** Plantuml mode
Dial down the indent
#+begin_src emacs-lisp
(use-package! plantuml-mode
  :config (setq plantuml-indent-level 4))
#+end_src
* Applications
Emacs is good for more than just editing text
** RSS
Use ~elfeed~ for RSS. Doom provides most of the configuration, but we'll make a few minor tweaks:
 - Automatically update the feed when opening elfeed
 - Set default filter to only show unread posts
 - Put the elfeed directory in the org dir (I have it in syncthing)
 - Create a global keybinding for elfeed (~C-x w~)

#+begin_src emacs-lisp
(use-package! elfeed
  :hook (elfeed-search-mode . elfeed-update)
  :hook (elfeed-show-mode . variable-pitch-mode)
  :hook (elfeed-show-mode . visual-line-mode)
  ;; :bind ("C-x w" . elfeed)
  :config
  (setq elfeed-search-filter "@4-weeks-ago +unread"
        elfeed-db-directory (concat org-directory "elfeed/db/")
        elfeed-enclosure-default-dir (concat org-directory "elfeed/enclosures/")
        shr-max-width nil)
  (make-directory elfeed-db-directory t))
#+end_src
** Email
Do a lil sneaky to make this linux only
#+begin_src emacs-lisp
(when IS-LINUX
#+end_src

Use ~mu4e~ for email. Most of the bootstrap is provided by doom emacs.
First, tell mu4e to use msmtp
#+begin_src emacs-lisp
(after! mu4e
  (setq sendmail-program (executable-find "msmtp")
        send-mail-function #'smtpmail-send-it
        message-sendmail-f-is-evil t
        message-sendmail-extra-arguments '("--read-envelope-from")
        message-send-mail-function #'message-send-mail-with-sendmail
        mu4e-headers-buffer-name "mail"))
#+end_src
Tell it where our account's stuff is
#+begin_src emacs-lisp
(after! mu4e
  (set-email-account! "mccarty.io"
                      '((mu4e-sent-folder . "/nathan@mccarty.io/Sent")
                        (mu4e-drafts-folder . "/nathan@mccarty.io/Drafts")
                        (mu4e-trash-folder . "/nathan@mccarty.io/Trash")
                        (mu4e-refile-folder . "/nathan@mccarty.io/Archive")
                        (smtpmail-smtp-user . "nathan@mccarty.io"))
                      t))
#+end_src
Setup our bookmarks, resetting the list of bookmarks first so we can go completely custom
#+begin_src emacs-lisp
(after! mu4e
  (setq mu4e-bookmarks '())
  (add-to-list 'mu4e-bookmarks
               '(:name "All Mail"
                 :key ?a
                 :query "NOT flag:trashed"))
  (add-to-list 'mu4e-bookmarks
               '(:name "Unread Notifications - nathan@mccarty.io"
                 :key ?n
                 :query "maildir:\"/nathan@mccarty.io/Folders/Notifications/\" AND NOT flag:trashed AND flag:unread"))
  (add-to-list 'mu4e-bookmarks
               '(:name "Unread Mailing Lists - nathan@mccarty.io"
                 :key ?m
                 :query "maildir:\"/nathan@mccarty.io/Folders/Mailing Lists/\" AND NOT flag:trashed AND flag:unread"))
  (add-to-list 'mu4e-bookmarks
               '(:name "Inbox - nathan@mccarty.io"
                 :key ?i
                 :query "maildir:\"/nathan@mccarty.io/Inbox\" AND NOT flag:trashed"))
  (add-to-list 'mu4e-bookmarks
               '(:name "Unread - All"
                 :key ?U
                 :query "flag:unread AND NOT flag:trashed AND NOT maildir:\"/nathan@mccarty.io/Folders/Notifications/\" AND NOT maildir:\"/nathan@mccarty.io/Folders/Mailing Lists/\""))
  (add-to-list 'mu4e-bookmarks
               '(:name "Unread - Non-Inbox"
                 :key ?u
                 :query "flag:unread AND NOT flag:trashed AND NOT maildir:\"/nathan@mccarty.io/Folders/Notifications/\" AND NOT maildir:\"/nathan@mccarty.io/Folders/Mailing Lists/\" AND NOT maildir:\"/nathan@mccarty.io/Inbox\"")))
#+end_src
Setup the maildirs we want to see, we'll show our notifications
#+begin_src emacs-lisp
(after! mu4e
  (setq mu4e-maildir-shortcuts
        '((:maildir "/nathan@mccarty.io/Folders/Notifications/Github" :key ?h)
          (:maildir "/nathan@mccarty.io/Folders/Notifications/Gitlab" :key ?l)
          (:maildir "/nathan@mccarty.io/Folders/Notifications/SourceHut" :key ?s)
          (:maildir "/nathan@mccarty.io/Folders/Archival/Receipts/2023" :key ?r)
          (:maildir "/nathan@mccarty.io/Folders/Archival/Informed Delivery" :key ?i))))
#+end_src
Tell it not to update the mail itself, we have a systemd unit for that
#+begin_src emacs-lisp
(setq +mu4e-backend nil)
(after! mu4e
        (setq mu4e-get-mail-command "mbsync -a"
              mu4e-update-interval 300))
#+end_src
We need to tell mu4e to rename files when they are moved, or else mbsync will break, see [[https://github.com/djcb/mu/issues/613#issuecomment-166714305][issue]] and [[http://tiborsimko.org/mbsync-duplicate-uid.html][blog post]]
#+begin_src emacs-lisp
(after! mu4e
  (setq mu4e-change-filenames-when-moving t))
#+end_src

Now setup notifications
#+begin_src emacs-lisp
(use-package! mu4e-alert
  :demand t
  :config
  (mu4e-alert-set-default-style 'libnotify)
  (setq mu4e-alert-interesting-mail-query
        (concat
         "flag:unread"
         " AND NOT flag:trashed"
         " AND maildir:"
         "\"/nathan@mccarty.io/Inbox\""))
  (add-hook 'after-init-hook #'mu4e-alert-enable-notifications)
  (add-hook 'after-init-hook #'mu4e-alert-enable-mode-line-display))
#+end_src

#+begin_src emacs-lisp
)
#+end_src

** [[https://github.com/stsquad/emacs_chrome][Edit with Emacs]]
#+begin_src emacs-lisp
(use-package! edit-server
  :commands edit-server-start
  :init (if after-init-time
            (edit-server-start)
          (add-hook 'after-init-hook
                    #'(lambda() (edit-server-start))))
  :config (setq edit-server-new-frame nil))
#+end_src

** Emacs calculator
Bind calc to ~SPC o c~
#+begin_src emacs-lisp
(require 'calc)
(map! :leader
      (:prefix ("z c" . "calc")
               "c" #'calc
               "q" #'quick-calc
               "d" #'calc-dispatch
               "g" #'calc-grab-region))
#+end_src

Group digits by default
#+begin_src emacs-lisp
(setq calc-group-digits t)
#+end_src